RAS PhysicsКристаллография Crystallography Reports

  • ISSN (Print) 0023-4761
  • ISSN (Online) 3034-5510

Molecular dynamics and small-angle x-ray scattering: a comparison computational and experimental approaches to studying the structure of biological complexes

PII
10.31857/S0023476124050069-1
DOI
10.31857/S0023476124050069
Publication type
Article
Status
Published
Authors
Volume/ Edition
Volume 69 / Issue number 5
Pages
802-810
Abstract
The results of studying DNA-protein complexes using two independent structural methods – molecular dynamics (MD) and small-angle X-ray scattering (SAXS) – are compared. MD is a computational method that allows visualization of macromolecule behavior in real environmental conditions based on the laws of physics but suffers from numerous simplifications. SAXS is an X-ray method that allows the reconstruction of the three-dimensional structure of an object in solution based on the one-dimensional profile of small-angle scattering, which presents the problem of ambiguity in solving inverse problems. The use of structural characteristics of complexes obtained by the SAXS method for validating 3D structural models obtained in MD experiments has significantly reduced the ambivalence of theoretical predictions and demonstrated the effectiveness of combining MD and SAXS methods for solving structural biology problems.
Keywords
Date of publication
15.09.2025
Year of publication
2025
Number of purchasers
0
Views
13

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